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Publications and Presentations

Please note that we only provide our own final (camera-ready) versions of the papers, for the actual published version please refer to the publisher's website.

Journal Publications

V. Agarwal, T. Podchiyska, J. M. Banda, V. Goel, T. I. Leung, E. P. Minty, T. E. Sweeney, E. Gyang, N.H. Shah. “Learning statistical models of phenotypes using noisy labeled training data”. Accepted in Journal of the American Medical Informatics Association (JAMIA). Impact Factor: 3.504.

J. M. Banda, A. Callahan, R. Winnenburg, H. Strasberg, A. Cami, B. Reis, S. Vilar, G. Hripcsak, M. Dumontier, N.H. Shah. “Feasibility of prioritizing Drug-Drug-Event Associations Found in Electronic Health Records”. Drug Safety Vol. 39(1) pp. 45-57, 2016. DOI: 10.1007/s40264-015-0352-2. Impact Factor: 2.824.

J. M. Banda, R. A. Angryk. “Regional Content-Based Image Retrieval for Solar Images: Traditional versus Modern Methods” Astronomy and Computing. Vol. 13, pp. 108-116. 2015. DOI:10.1016/j.ascom.2015.09.005.

M.A. Schuh, J. M. Banda, T. Wiley, P. McInerney, K-G. Pillai, R.A. Angryk. “On visualization techniques for solar data mining”. Astronomy and Computing. Vol. 10, pp. 32-42. 2015. DOI:10.1016/j.ascom.2014.12.003.

J. M. Banda, R.A. Angryk, P. Martens. “On dimensionality reduction for indexing and retrieval of large-scale solar image data”. Solar Physics: Image processing in the petabyte era. Springer 2012. DOI:10.1007/s11207-012-0027-4 [Download Pre-Final Version in PDF] in print: Volume 283, Issue 1, pp. 113-141. Impact Factor: 3.805

J. M. Banda, R.A. Angryk, P. Martens. “Steps Toward a Large-Scale Solar Image Data Analysis to Differentiate Solar Phenomena”, Solar Physics, Springer, 2013. DOI: 10.1007/s11207-013-0304-x [Download Pre-Final Version in PDF]. in print: Volume 288, Issue 1 pp. 435-462. Impact Factor: 3.805

M.A. Schuh, J. M. Banda, P.N. Bernasconi, R.A. Angryk, P.C.H. Martens, "A Comparative Evaluation of Automated Solar Filament Detection”, Solar Physics. Vol. 289 (7) pp. 2503-2524. DOI: 10.1007/s11207-014-0495-9. Impact Factor: 3.805

J.M. Banda, R. A. Angryk, P. C. H. Martens. “imageFARMER – Introducing a framework for the creation of large-scale content-based image retrieval systems”. International Journal of Computer Applications 79(13):8-13, October 2013. Published by Foundation of Computer Science, New York, USA. [Download Final Version in PDF]

Book Chapters

J. M. Banda, T. Kuhn, N.H. Shah, M. Dumontier “Provenance-Centered Dataset of Drug-Drug Interactions”. In Lecture Notes in Computer Science: The Semantic Web - ISWC 2015, Volume 9367, 2015, pp. 293-300, Springer International Publishing, ISBN: 978-3-319-25009-0. DOI: 10.1007/978-3-319-25010-6_18.

J.M. Banda & R. A. Angryk. “Large-Scale Region-Based Multimedia Retrieval for Solar Images”. In Lecture Notes in Computer Science: Artificial Intelligence and Soft Computing, Volume 8467, 2014, pp. 649-661, Springer International
Publishing, ISBN: 978-3-319-07172-5. DOI: 10.1007/978-3-319-07173-2_55

J. M. Banda, M. A. Schuh, R. A. Angryk, K-G. Pillai, P. McInerney. "Big Data New Frontiers: Mining, Search and Management of Massive Repositories of Solar Image Data and Solar Events". In New Trends in Databases and Information Systems Advances in Intelligent Systems and Computing, Volume 241, 2014, pp. 151-158, Springer International Publishing, ISBN: 9783319018621. DOI: 10.1007/978-3-319-01863-8_17 [Download Pre-Final Version in PDF]

J. M. Banda, M. A. Schuh, T. Wylie, P. McInerney, R. A. Angryk. "When Too Similar is Bad: A Practical Example of the Solar Dynamics Observatory Content-Based Image-Retrieval System". In New Trends in Databases and Information Systems Advances in Intelligent Systems and Computing, Volume 241, 2014, pp. 87-95, Springer International Publishing, ISBN: 9783319018621. DOI: 10.1007/978-3-319-01863-8_10 [Download Pre-Final Version in PDF]

M. A. Schuh, T. Wylie, J.M. Banda, R. A. Angryk. “A Comprehensive Study of iDistance Partitioning Strategies for kNN Queries and High-Dimensional Data Indexing”. In Lecture Notes in Computer Science: Big Data, Volume 7968, 2013, pp. 238-252, Springer Berlin Heidelberg, ISBN: 9783642394669. DOI: 10.1007/978-3-642-39467-6_22 [Download Pre-Final Version in PDF]

K-G. Pillai, L. Sturlaugson, J.M. Banda, R.A. Angryk. "Extending High-Dimensional Indexing Techniques Pyramid and iMinMax(θ): Lessons Learned", ”. In Lecture Notes in Computer Science: Big Data, Volume 7968, 2013, pp. 253-267, Springer Berlin Heidelberg, ISBN: 9783642394669. DOI: 10.1007/978-3-642-39467-6_23 [Download Pre-Final Version in PDF]

K-G. Pillai, R. A. Angryk, J. M. Banda, T. Wylie, M. A. Schuh. “Spatiotemporal Co-occurrence Rules”. In Lecture Notes in Computer Science: Big Data, Volume 7968, 2013, pp. 253-267, Springer Berlin Heidelberg, ISBN: 9783642394669. DOI: 10.1007/978-3-642-39467-6_23 [Download Pre-Final Version in PDF]

 

Refereed Conference Publications

K. E. Niehaus, J. M. Banda, J. W. Knowles, N. H. Shah. “FIND FH – A phenotype model to identify patients with familial hypercholesterolemia”. In AMIA 2015 Annual Symposium. 2nd Workshop on Data Mining for Medical Informatics: Predictive Analytics. 2015. [Download Pre-Final Version in PDF]

J. M. Banda & R. A. Angryk. “Unsupervised learning techniques for detection of regions of interest in Solar Images” In 2015 IEEE International Conference on Data Mining Workshops (ICDMW 2015) DSBDA: Data Science and Big Data Analytics Workshop. 2015. [Download Pre-Final Version in PDF]

J. M. Banda & R. A. Angryk. "Scalable Solar Image Retrieval with Lucene". In IEEE Big Data – Workshop on Solar Astronomy Big Data (SABiD) 2014. pp. 11-17. [Download Pre-Final Version in PDF]

J. M. Banda, M. A. Schuh, R. A. Angryk, P. C. H. Martens. “Image Retrieval On Compressed Images: Can We Tell The Difference?” In The International Conference on Image Processing Theory, Tools and Applications (IPTA) -2014. pp. 1-6. [Download Pre-Final Version in PDF]

J. M. Banda, C. Liu, R. A. Angryk. “Region-based Querying Using Descriptor Signatures for Solar Physics”. To appear In 2013 IEEE International Conference on Data Mining Workshops (ICDMW 2013) – Astroinformatics workshop. [Download Pre-Final Version in PDF]

P. McInerney, J. M. Banda, R. A. Angryk. “On Using SIFT Descriptors for Image Parameter Evaluation”. To appear In 2013 IEEE International Conference on Data Mining Workshops (ICDMW 2013) – Astroinformatics workshop. [Download Pre-Final Version in PDF]

M.A. Schuh, R.A. Angryk, K-G. Pillai, J.M. Banda & P. C. H. Martens. “A large-scale solar image dataset with labeled event regions”. In Proc. of the International Conference on Image Processing (ICIP) (2013), pp. 4349–4353. [Download Pre-Final Version in PDF]

K-G. Pillai, R.A Angryk, J. M. Banda, M.A. Schuh, T. Wylie, “Spatio-temporal Co-occurrence Pattern Mining in Data Sets with Evolving Regions”, In 2012 IEEE International Conference on Data Mining Workshops (ICDMW 2012), Brussels, Belgium, December 10-13th, 2012. pp. 805-812. [Download Pre-Final Version in PDF]

J.M. Banda, R. Angryk, P. Martens, "Quantitative Comparison of Linear and Non-linear Dimensionality Reduction Techniques for Solar Image Archives", Proceedings of the 25th International FLAIRS Conference (FLAIRS-25), Marco Island, Florida, May 2012, pp. 376-381. [Download in PDF]

P. Martens, R.A Angryk, J.M. Banda, K-G. Pillai, M.A. Schuh, "Filament and Sigmoid Statistics Gathered by Newly Developed Automated Feature Finding Modules", NSO Workshop #26: Solar Origins of Space Weather and Space Climate: Connecting the Interior to the Corona, Sacramento Peak, April 30 - May 4, 2012. Contributed Paper.

J.M. Banda, R.A Angryk, P. Martens. “On the surprisingly accurate transfer of image parameters between medical and solar images”, ICIP-IEEE '11, Brussels, Belgium, September 2011, pp. 3730-3733. [Download in PDF]

J.M Banda and R.A Angryk “Selection of Image Parameters as the First Step Towards Creating a CBIR System for the Solar Dynamics Observatory”. International Conference on Digital Image Computing: Techniques and Applications (DICTA). Sydney, Australia, December 1-3, 2010. pp. 528-534. [Download in PDF]

J.M Banda and R.A Angryk “Usage of dissimilarity measures and multidimensional scaling for large scale solar data analysis”. NASA Conference of Intelligent Data Understanding (CIDU 2010). Computer History Museum, Mountain View, CA October 5th - 6th, 2010. pp. 189-203. [Download in PDF]

J.M Banda and R.A Angryk “An Experimental Evaluation of Popular Image Parameters for Monochromatic Solar Image categorization” Proceedings of the twenty-third international Florida Artificial Intelligence Research Society conference (FLAIRS-23), Daytona Beach, Florida, USA, May 19–21 2010. pp. 380-385. [Download in PDF]

J.M Banda and R.A Angryk “On the effectiveness of fuzzy clustering as a data discretization technique for large-scale classification of solar images” Proceedings of the 18th IEEE International Conference on Fuzzy Systems (FUZZ-IEEE ’09), Jeju Island, Korea, August 2009, pp. 2019-2024. [Download in PDF]

J.M Banda, A. Chmura and M. Heumann “Definition of Relational Database Structures Using Prime Numbers and Checksums,” Proceedings of the 2007 Northeast Decision Sciences Institute (DSI 2007), Baltimore, March 28-30, 2007.

J.M Banda “Multiple Fish Tracking” 33rd Annual ENMU Academic Student Research Conference 2007, Portales, New Mexico 2007. (Winner first place computer science / mathematics paper)

J.M Banda, A. Chmura and M. Heumann “Representing Relational Database Structures with Prime Numbers,” Proceedings of the 2006 Decision Sciences Institute (DSI 2006), San Antonio, November 18-21, 2006.

J.M Banda “Database design patters with prime numbers” 32nd Annual ENMU Academic Student Research Conference 2006, Portales, New Mexico 2006

J.M Banda “Fish Tracking” 32nd Annual ENMU Academic Student Research Conference 2006, Portales, New Mexico 2006 (Winner first place computer science / mathematics paper)

J.M Banda, A. Chmura and M. Heumann "Associating Logical Data Model Patterns with SQL Statements," Proceedings of the 2005 Decision Sciences Institute (DSI 2005), San Francisco, November 19-23, 2005, pp. 18121-18126.

Posters

L. Evans, R. Boyce, E. Voss, N. Tatonetti, P. Ryan, J. M. Banda, N. H. Shah "Standardizing FAERS Adverse Event Cases For Research Using The OHDSI Athena Standard Vocabularies". OHDSI Symposium 2015, Washington, D.C., October 20th, 2015.

Y. Halpern, S. Horng, D. Sontag, J. M. Banda, N. H. Shah. "Lift your Anchors and Begin the OHDSI with APHRODITE". OHDSI Symposium 2015, Washington, D.C., October 20th, 2015.

M.A. Schuh, J. M. Banda, R.A Angryk, P. Martens. “Introducing the first publicly available Content-Based Image-Retrieval system for the Solar Dynamics Observatory mission”. SPD Meeting, Bozeman, Montana, July 2013.

J. M. Banda, R.A Angryk, P. Martens. "Compressing SDO's FITS Image Files, a Atudy From An Image-Processing Perspective", Solar Image Processing (SIPS) Workshop IV. Bozeman, MT, August 13-16, 2012.

Michael Schuh, J. M. Banda, P. Bernasconi, R.A Angryk, P. Martens, "A Comparative Evaluation of Automated Solar Filament Detection", AAS/SPD Meeting, Anchorage, AK, June 12-16, 2012.

J. M. Banda, R.A Angryk, P. Martens, "Content-based Image Retrieval For Solar Physics: First Steps And A Practical Demonstration", AAS/SPD Meeting, Anchorage, AK, June 12-16, 2012.

R.A Angryk, J. M. Banda, M. Schuh, K. Ganesan Pillai, H. Tosun, P. Martens, "Supporting Solar Physics Research via Data Mining", AAS/SPD Meeting, Anchorage, AK, June 12-16, 2012.

Abstracts

J.M Banda, H. Strasberg, N.H. Shah "Assessing the plausibility of drug interactions signals learned from the EHR" AMIA Joint Summits March 23, 2015.

J.M Banda, A. Chmura and M. Heumann “Automating Relational Database Input Form Design Using Logical Data Model Patterns” 2007 Decision Sciences Institute, Phoenix, November 17-20, 2007.

J.M Banda, A. Chmura and M. Heumann "Using Logical Data Model Patterns to Define Relational Database Navigation Strategies" 2005 Decision Sciences Institute, San Francisco, November 19-23, 2005.

Presentations

"APHRODITE for phenotype development" OHDSI Symposium 2015, October 20th, 2015.

“Region-based Querying Using Descriptor Signatures for Solar Physics” and “On Using SIFT Descriptors for Image Parameter Evaluation” (click on the files for the slides). IEEE ICDM 2013 - Astroinformatics Workshop. Dallas, TX, December 7th, 2013.

“Usage of dissimilarity measures and multidimensional scaling for large scale solar data analysis”. NASA Conference of Intelligent Data Understanding (CIDU 2010). Computer History Museum, Mountain View, CA October 5th - 6th, 2010

“First Steps towards Creating a Content-Based Image Retrieval System for the NASA’s Solar Dynamics Observatory Mission” Graduate Research Seminar, Montana State University (Spring 2010).

“Multiple Fish Tracking” ENMU Academic Student Research Conference, New Mexico 2007 (First place computer science / mathematics paper)

“Database design patters with prime numbers” ENMU Academic Student Research Conference, New Mexico 2006

“Database table structure representation with prime numbers” ENMU Academic Student Research Conference, New Mexico 2006

“Fish Tracking” ENMU Academic Student Research Conference, New Mexico 2006 (First place computer science / mathematics paper)